Okay, not to come off harsh, but if you haven't heard those terms before, you haven't done any research about the AP yet. Go to
http://www.cobbforums.com/forums/ and
www.cobbtuning.com and read read read. Try calling Cobb first, then post on Cobb forums in the AP subforum, and if you still can't find the issue but have a good understanding of how the AP works (and the EJ20 in general) we will be better able to help you... and more willing, since we don't have to give you a page of background for every one line suggestion on how to troubleshoot issues with modded engines.
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Originally Posted by 100_Percent_Juice
Yeah those are my only mods. Wouldnt i have to marry the AP to the car before I can divorce it?
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If you are loading and running maps, the AP is married to your ECU. You can't use it on another car until it's divorced. It seems that you bought the car with the AP already installed if you didn't already know this. Were there any other mods that were on it before that were taken off, particularly an intake?